Yu-Cheng Lin

Name: Yu-Cheng Lin

Assistant Professor

Department of Dentistry

College of Dentistry

National Yang Ming Chiao Tung University


DDS (National Taiwan University, Taiwan)

MS (National Taiwan University, Taiwan)
PhD (Columbia University, USA)


Appointment Status
Assistant Professor


Bioinformatics, Machine Learning, Microbiology, Genetics


Membership of Associated Professional Bodies

Publications (5-year, key author)

  1. Baum C, Lin Y-C, Fomenkov A, Anton BP, Chen L, Yan B, Evans TC, Roberts RJ, Tolonen AC, Ettwiller L (2021) Rapid identification of methylase specificity (RIMS-seq) jointly identifies methylated motifs and generates shotgun sequencing of bacterial genomes. Nucleic Acids Research.
  2. Wang B, Lin Y-C, Vasquez-Rifo A, Jo J, Price-Whelan A, McDonald ST, Brown LM, Sieben C, Dietrich LEP (2021) Pseudomonas aeruginosa PA14 produces R-bodies, extendable protein polymers with roles in host colonization and virulence. Nature Communications, 12(1): 4613.
  3. Chen J-L, Lin Y-C, Fu H-Y, Yang C-S (2019) The Blue-Green Sensory Rhodopsin SRM from Haloarcula marismortui Attenuates Both Phototactic Responses Mediated by Sensory Rhodopsin I and II in Halobacterium salinarum. Scientific Reports 9: 5672.
  4. Lin Y-C, Cornell W-C, Jo J, Price-Whelan A, Dietrich LEP (2018) The Pseudomonas aeruginosa Complement of Lactate Dehydrogenases Enables Use of D- and L-Lactate and Metabolic Cross-Feeding. mBio 9: e00961-18.
  5. Lin Y-C, Sekedat MD, Cornell WC, Silva GM, Okegbe C, Price-Whelan A, Vogel C, Dietrich LEP (2018) Phenazines regulate Nap-dependent denitrification in Pseudomonas aeruginosa J. Bacteriol., JB.00031-18.
  6. Fong JC, Rogers A, Michael AK, Parsley NC, Cornell W-C, Lin Y-C, Singh PK, Hartmann R, Drescher K, Vinogradov E, Dietrich LE, Partch CL, Yildiz FH (2017) Structural dynamics of RbmA governs plasticity of Vibrio cholerae eLife, 6.
  7. Choi PH, Jo J, Lin Y-C, Lin M-H, Chou C-Y, Dietrich LEP, Tong L (2016) A distinct holoenzyme organization for two-subunit pyruvate carboxylase. Commun., 7, 12713.
  8. *Madsen JS, *Lin Y-C, *Squyres GR, Price-Whelan A, de Santiago Torio A, Song A, Cornell WC, Sørensen SJ, Xavier JB, Dietrich LEP (2015) Facultative control of matrix production optimizes competitive fitness in Pseudomonas aeruginosa PA14 biofilm models. Environ. Microbiol., 81(24), 8414–8426. *These authors contributed equally


Email Address: ylin@nycu.edu.tw